Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs1693484 chr17:39337846 C/T 6.24E-7 134 42.18 46.03 13.17 KM Plot
TGCT rs16963425 chr19:30340724 G/A 2.84E-6 130 37.3 54.18 20.6 KM Plot
TGCT rs16963431 chr19:30344536 C/T 3.86E-6 128 37.2 51.67 20.6 KM Plot
TGCT rs16966703 chr17:39502398 A/G 8.47E-7 131 45.83 33.87 13.17 KM Plot
TGCT rs17004630 chr21:45508561 A/G 1.42E-9 134 12.03 49.93 40.57 KM Plot
TGCT rs170277 chr6:105538806 G/A 1.83E-5 133 20.42 37.3 42.18 KM Plot
TGCT rs17039656 chr9:137942956 A/G 3.57E-7 134 17.28 42.1 42.27 KM Plot
TGCT rs17042843 chr12:77466341 C/T 0 134 0.57 51.67 39.38 KM Plot
TGCT rs17087692 chr6:156979025 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs17087694 chr6:156979348 A/T 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs17087699 chr6:156979600 C/T 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs17087720 chr6:157021745 G/C 0.000123 132 38.2 68.97 59.27 KM Plot
TGCT rs17152978 chr8:11044927 C/T 1.13E-13 134 17.1 37.3 42.18 KM Plot
TGCT rs17155886 chr10:1145182 A/G 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs17222141 chr8:20028895 G/T 3.48E-12 132 42.27 41.47 20.6 KM Plot